LABEL: Lineage Assignment By Extended Learning
LABEL was designed for the rapid annotation of influenza (or other virus) clades using profile Hidden Markov models and support vector machines. In particular, LABEL comes with modules to annotate clades for influenza A(H5N1) hemagluttinin gene segments as described by the WHO/FAO/OIE H5N1 nomenclature working group. For more details on LABEL, read the manuscript, the documentation, or CONTACT US (do not contact CDC Wonder).
NOTE: the SAM binaries packaged within LABEL may be used for government and/or academic use only. Commercial use and redistribution for commercial use is excluded. Use of SAM implies this license. For the rest of LABEL, please read the full license and disclaimer.
- LABEL v0.6.4 (zip) for Linux and Mac OS X, 09-2022NEW!
- LABEL v0.6.1 (zip) for Linux and Mac OS X, 11-2019
- LABEL v0.5.2 (zip) for Linux and Mac OS X, 08-2016
Annotation Modules in v0.6.1 and later
- B_HAv2017 & B_NAv2016 - Influenza B hemagglutinin and neuraminidase clade nomenclature, data trained in 2017 and 2016 respectively. (in submission)
- B_PB2v2016, B_PB1v2016, B_PAv2016, B_NPv2016, B_MPv2016, & B_NSv2016 - Influenza B internal gene segment lineage nomenclature, data trained in 2016. (in submission)
v0.4.6 and later
- H5v2015 - Influenza A hemagglutinin module for subtype H5N1, current to 31 DEC 2014, nomenclature accepted 2015
- H5v2013 - Influenza A hemagglutinin module for subtype H5N1, current to 31 DEC 2012, nomenclature accepted c. 2013
- H5v2011 - Influenza A hemagglutinin module for subtype H5N1, current to 19 MAR 2012, nomenclature accepted c. 2011
- H9v2011 - Influenza A hemagglutinin module for subtype H9N2, current to 27 MAR 2012
Used in LABEL
Optionally called by LABEL
Return to the Influenza Division Bioinformatics Team homepage