IRMA: Iterative Refinement Meta-Assembler

Disclaimer, Terms and Conditions

Aggregated / packaged third-party software that distribute with IRMA

• SAM (align2model,hmmscore,modelfromalign) binaries may be used within LABEL for government and/or academic use only. Commercial use and redistribution for commercial use is excluded and requires explicit permission from the author. Use of SAM implies this license.
• BLAT binaries packaged within IRMA may be used for government and/or academic use only. Commercial use and redistribution for commercial use is excluded. Use of BLAT requires this license.
• SSW uses its own MIT license.
• MINIMAP2 is packaged within IRMA and has an MIT license.
• samtools also has an MIT license
• GNU Parallel (packaged within IRMA & LABEL), Shogun Toolbox (packaged within LABEL) is GPL3
• PIGZ is packaged within IRMA and is free to redistribute.

IRMA License

The repository utilizes code licensed under the terms of the Apache Software License and therefore is licensed under ASL v2 or later. This source code in this repository is free: you can redistribute it and/or modify it under the terms of the Apache Software License version 2, or (at your option) any later version. This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache Software License for more details. You should have received a copy of the Apache Software License along with this program. If not, see: http://www.apache.org/licenses/LICENSE-2.0.html. The source code forked from other open source projects will inherit its license.

DISCLAIMER and LIMITATION of LIABILITY

The material embodied in this software is provided to you "as-is" and without warranty of any kind, express, implied or otherwise, including without limitation, any warranty of fitness for a particular purpose. In no event shall the Centers for Disease Control and Prevention (CDC) or the United States (U.S.) government be liable to you or anyone else for any direct, special, incidental, indirect or consequential damages of any kind, or any damages whatsoever, including without limitation, loss of profit, loss of use, savings or revenue, or the claims of third parties, whether or not CDC or the U.S. government has been advised of the possibility of such loss, however caused and on any theory of liability, arising out of or in connection with the possession, use or performance of this software.

See also notices.

Formerly packaged in IRMA and/or LABEL

• FastTree2 (removed from LABEL v0.7.0)
• MUSCLE (removed from LABEL v0.7.0)