`A_MP-deletions.txt`

Reference_Name	Upstream_Position	Length	Context	Called	Count	Total	Frequency	PairedUB
A_MP	17	1	ACCGA-GTCGA	FALSE	2	9150	0.000218579234972678	0.000670773106140572
A_MP	53	1	TCAGG-CCCCT	FALSE	2	14026	0.000142592328532725	0.000443583245781697
A_MP	58	1	CCCCC-CAAAG	FALSE	2	14556	0.000137400384721077	0.000428053593754673
A_MP	60	1	CCCTC-AAGCC	FALSE	3	14576	0.000205817782656422	0.000427489660581939
A_MP	93	1	ATGTC-TTGCT	FALSE	2	16570	0.00012070006035003	0.000378092807904621
A_MP	99	1	TTGCT-GGAAA	FALSE	2	16526	0.00012102142079148	0.00037905432705481
A_MP	102	1	CTGGG-AAAAC	FALSE	15	16934	0.000885791897956773	0.000370329853603138
A_MP	137	1	TGGCT-AAGAC	FALSE	2	18409	0.000108642511814873	0.000342011715605808
A_MP	161	1	TCACC-TTGAC	FALSE	2	18839	0.000106162747491905	0.000334590027646594
A_MP	168	1	TGACT-AGGGG	FALSE	3	18991	0.000157969564530567	0.000332046839741662
A_MP	170	1	ACTAA-GGGAT	FALSE	3	19007	0.000157836586520756	0.000331781498721357
A_MP	175	1	GGGGA-TTTAG	FALSE	2	19526	0.000102427532520742	0.000323410003722294
A_MP	187	1	GTTTG-TTTCA	FALSE	2	18782	0.000106484932382068	0.000335554321023139
A_MP	234	1	GACGC-TTGTC	FALSE	2	19678	0.000101636345157028	0.000321041722678501
A_MP	241	1	TGTCC-AAATG	FALSE	4	20044	0.000199560965875075	0.00031548631316239
A_MP	246	1	AAAAT-CCCTC	FALSE	2	19978	0.000100110121133247	0.000316473086798691
A_MP	269	1	GACCC-AATAA	FALSE	2	22303	8.96740348831996e-05	0.000285227514970159
A_MP	272	1	CCAAA-AACAT	FALSE	2	22118	9.04240889773036e-05	0.000287473552255624
A_MP	282	1	TGGAC-AAGCA	FALSE	4	21789	0.000183578870072055	0.000291561919078975
A_MP	336	1	GGGCC-AAGAA	FALSE	4	23940	0.000167084377610693	0.000266863132400664
A_MP	395	1	ATATA-AATAG	FALSE	3	26784	0.000112007168458781	0.000240286475574626
A_MP	404	1	AGGAT-GGGGC	FALSE	7	25064	0.000279285030322375	0.000255640271273502
A_MP	413	1	GCTGT-ACCAC	FALSE	2	25292	7.90763877906057e-05	0.000253485199658253
A_MP	424	7	TGAAG-------TGGCC	FALSE	2	24528	8.15394651011089e-05	0.000260864056581986
A_MP	429	1	TGGCA-TTGGC	FALSE	4	24945	0.000160352776107436	0.00025678068146398
A_MP	438	2	GCCTG--GTGTG	FALSE	3	25903	0.000115816700768251	0.00024789665848024
A_MP	446	1	TGTGC-ACATG	FALSE	2	24927	8.02342841096e-05	0.000256954126597538
A_MP	467	1	GCTGA-TCCCA	FALSE	8	23694	0.000337638220646577	0.000269461118628978
A_MP	497	1	ATGGT-GCAAC	FALSE	2	23473	8.52042772547182e-05	0.000271841427687497
A_MP	513	1	ATCCA-TAATA	FALSE	2	23101	8.65763386866369e-05	0.000275950758553331
A_MP	518	1	TTAAT-AAACA	FALSE	2	23209	8.61734671894524e-05	0.000274744181450749
A_MP	538	1	AATGG-TTTGG	FALSE	6	23362	0.000256827326427532	0.000273053925482501
A_MP	552	2	GCACT--AGCTA	FALSE	2	22880	8.74125874125874e-05	0.000278455210606539
A_MP	558	1	CAGCT-AGGCT	FALSE	3	22469	0.000133517290489118	0.000283243580816191
A_MP	590	48	AGTGA------------------------------------------------GCAGG	FALSE	4	16256	0.000246062992125984	0.000385068395838992
A_MP	657	1	CCATT-GGACT	FALSE	5	21023	0.000237834752414023	0.000301575681676824
A_MP	668	1	CATCC-AGTTC	FALSE	2	21411	9.34099294755033e-05	0.000296414034282032
A_MP	671	1	CCTAG-TCCAG	FALSE	2	22043	9.07317515764642e-05	0.000288394829546788
A_MP	673	1	TAGTT-CAGTA	FALSE	3	22946	0.000130741741479997	0.000277702231546348
A_MP	681	1	GTACT-GTCTA	FALSE	2	20501	9.75562167699137e-05	0.000308827704708885
A_MP	686	1	GGTCT-AGAGA	FALSE	3	21289	0.000140917844896425	0.00029801678024164
A_MP	707	1	GAAAA-TTGCA	FALSE	3	18929	0.000158486977653336	0.000333079267223687
A_MP	723	1	ATCAG-AACGA	FALSE	2	20640	9.68992248062015e-05	0.000306860832525201
A_MP	731	1	CGAAT-GGGGT	FALSE	9	20581	0.000437296535639668	0.000307692451760731
A_MP	745	1	GATGC-ACGAT	FALSE	2	20537	9.73852071870283e-05	0.000308315748047547
A_MP	749	1	CAACG-TTCAA	FALSE	2	20912	9.56388676358072e-05	0.000303087517606409
A_MP	787	1	TCATT-GGATC	FALSE	2	21398	9.34666791288906e-05	0.000296583950133272
A_MP	824	1	TCGTC-TTTTT	FALSE	79	18991	0.00415986519930493	0.000332046839741662
A_MP	832	1	TTTTC-AATGC	FALSE	4	20122	0.000198787396879038	0.000314328459464348
A_MP	865	1	GCCTT-AAAGA	FALSE	3	20374	0.000147246490625307	0.000310648201158281
A_MP	869	1	TAAAA-AGGCC	FALSE	2	17263	0.000115854718183398	0.000363594681155719
A_MP	870	1	AAAAG-GGCCC	FALSE	3	17227	0.000174145237127765	0.000364319140745917
A_MP	876	1	GGCCC-TCTAC	FALSE	2	17104	0.000116931711880262	0.000366817359869361
A_MP	884	1	TACGG-AGGAG	FALSE	2	16251	0.000123069349578487	0.00038518164998394

Reference_Name - Name of gene segment or genome assembled
Upstream_Position - Position before deletion variant
Length - Length of deletion variant
Context - 5 bp flanking regions around deletion variant
Called - Called deletion variant in terms of VCF
Count - Count of deletion variants
Total - Total depth of deletion variants (must have flanking states in read)
Frequency - Frequency of deletion variant
PairedUB - Assembly-specific interval upperbound for significance testing based on pair-end end error estimates (uses error rate of 0 for single-end).

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