READ_COUNTS.txt
| Record |
Reads |
Patterns |
PairsAndWidows |
| 0-R1 |
337222 |
NA |
NA |
| 0-R2 |
337222 |
NA |
NA |
| 1-initial |
674444 |
NA |
NA |
| 2-failQC |
4106 |
NA |
NA |
| 2-passQC |
670338 |
220298 |
NA |
| 3-chimeric |
279 |
267 |
NA |
| 3-nomatch |
514 |
514 |
NA |
| 3-unrecognizable |
5142 |
5122 |
NA |
| 3-match |
664399 |
214391 |
334065 |
| 3-altmatch |
4 |
4 |
NA |
| 4-A_HA_H3 |
129004 |
39647 |
64823 |
| 4-A_MP |
182006 |
50155 |
91546 |
| 4-A_NA_N2 |
44689 |
16364 |
22474 |
| 4-A_NP |
107553 |
33525 |
54116 |
| 4-A_NS |
45190 |
14451 |
22689 |
| 4-A_PA |
56578 |
21920 |
28456 |
| 4-A_PB1 |
53753 |
20554 |
27018 |
| 4-A_PB2 |
45626 |
17775 |
22943 |
| 5-A_NA_N1 |
4 |
4 |
NA |
- Record - Group of records
- Original data files
- Aggregated data
- Data partitioned during quality control step
- Data partitioned during the read gathering phase
- Primary data used in the final assembly phase (3-match)
- Additional secondary data not used in the final assembly phase
(3-altmatch)
- Reads - Number of reads for that group
- Patterns - Number of read patterns for the group. Patterns are de-duplicated read sequences.
- PairsAndWidows - The number of merged paired-end reads (if applicable). Widows have no paired-end
mate.
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