READ_COUNTS.txt
| Record | Reads | Patterns | PairsAndWidows |
| 0-R1 | 337222 | NA | NA |
| 0-R2 | 337222 | NA | NA |
| 1-initial | 674444 | NA | NA |
| 2-failQC | 4106 | NA | NA |
| 2-passQC | 670338 | 220298 | NA |
| 3-chimeric | 279 | 267 | NA |
| 3-nomatch | 514 | 514 | NA |
| 3-unrecognizable | 5142 | 5122 | NA |
| 3-match | 664399 | 214391 | 334065 |
| 3-altmatch | 4 | 4 | NA |
| 4-A_HA_H3 | 129004 | 39647 | 64823 |
| 4-A_MP | 182006 | 50155 | 91546 |
| 4-A_NA_N2 | 44689 | 16364 | 22474 |
| 4-A_NP | 107553 | 33525 | 54116 |
| 4-A_NS | 45190 | 14451 | 22689 |
| 4-A_PA | 56578 | 21920 | 28456 |
| 4-A_PB1 | 53753 | 20554 | 27018 |
| 4-A_PB2 | 45626 | 17775 | 22943 |
| 5-A_NA_N1 | 4 | 4 | NA |
- Record - Group of records
- Original data files
- Aggregated data
- Data partitioned during quality control step
- Data partitioned during the read gathering phase
- Primary data used in the final assembly phase (3-match)
- Additional secondary data not used in the final assembly phase (3-altmatch)
- Reads - Number of reads for that group
- Patterns - Number of read patterns for the group. Patterns are de-duplicated read sequences.
- PairsAndWidows - The number of merged paired-end reads (if applicable). Widows have no paired-end mate.
Return to the IRMA output page