Formulas related to IRMA configuration
Formulas related to IRMA configuration paramters, in particular, MIN_F, MIN_CONF, and AUTO_F.
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For any fixed site:

Expected error is used for the allele-specific confidence interval:

We define confidence as:

Adding the position subscript p, the automatic frequency heuristic (enabled by AUTO_F) is found:

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This page last reviewed: Tuesday, March 11, 2025
Content source: Influenza Division Bioinformatics Team