Formulas related to IRMA configuration
Formulas related to IRMA configuration paramters, in particular, MIN_F, MIN_CONF, and AUTO_F.
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For any fixed site:
![coverage-depth-formula](formula-coverage.png)
Expected error is used for the allele-specific confidence interval:
![expected-error-formula](formula-expected-error.png)
We define confidence as:
![confidence-formula](formula-confidence.png)
Adding the position subscript p, the automatic frequency heuristic (enabled by AUTO_F) is found:
![auto-f-formula](formula-auto-f.png)
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This page last reviewed: Tuesday, November 19, 2019
Content source: Influenza Division Bioinformatics Team