Formulas related to IRMA configuration

Formulas related to IRMA configuration paramters, in particular, MIN_F, MIN_CONF, and AUTO_F.


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For any fixed site:

coverage-depth-formula


Expected error is used for the allele-specific confidence interval:

expected-error-formula



We define confidence as:

confidence-formula


Adding the position subscript p, the automatic frequency heuristic (enabled by AUTO_F) is found:

auto-f-formula



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This page last reviewed: Tuesday, November 19, 2019
Content source: Influenza Division Bioinformatics Team