`A_MP-insertions.txt`

Reference_Name	Upstream_Position	Insert	Context	Called	Count	Total	Frequency	Average_Quality	ConfidenceNotMacErr	PairedUB	QualityUB
A_MP	82	AG	gagacAGttgaa	FALSE	3	16290	0.000184162062615101	35.1666666666667	0	0.00036707539568417	0.000961800200756893
A_MP	99	G	ttgctGgggaa	FALSE	2	16541	0.000120911674022127	39	0	0.000361506504117258	0.000641232265632986
A_MP	102	A	ctgggAaaaaa	FALSE	5	16941	0.00029514196328434	38.4	0.510256096875865	0.000352972734489707	0.000667031931828378
A_MP	241	A	tgtccAaaaat	FALSE	3	20056	0.000149581172716394	38.6666666666667	0.0912249408180088	0.000298160984327772	0.000589044568255524
A_MP	275	C	aataaCcatgg	FALSE	3	22683	0.000132257637878587	31	0	0.00026363559568998	0.00153121064775404
A_MP	294	C	ttaaaCctgta	FALSE	2	22614	8.84407888918369e-05	38.5	0	0.00026443986910359	0.000559776799356016
A_MP	387	TGT	tgggcTGTctcat	FALSE	12	25214	0.000475926072816689	38.0833333333333	0.673316523123116	0.000237175596082399	0.000552355008190813
A_MP	467	T	gctgaTttccc	FALSE	2	23737	8.4256645742933e-05	38	0	0.000251931167584292	0.000575240311869758
A_MP	486	A	ctcatAaggca	FALSE	2	24982	8.00576415018814e-05	39	0	0.000239377840764426	0.000503213644051179
A_MP	538	T	aatggTttttg	FALSE	2	23613	8.46991064244272e-05	28.5	0	0.000253253934811456	0.00231729358403654
A_MP	687	AG	gtctaAGagaga	FALSE	4	21331	0.000187520510055787	39	0.328646551025465	0.000280342391081255	0.000550328576048012
A_MP	791	T	tgggaTtcttg	FALSE	12	21243	0.000564891964411806	38.3333333333333	0.740162834649203	0.000281503515907254	0.000589491013235257
A_MP	824	TT	tcgtcTTttttt	FALSE	3	19003	0.000157869810029995	38.1666666666667	0.0338729385629669	0.000314679510454243	0.000638161637822869
A_MP	824	T	tcgtcTttttt	FALSE	58	19003	0.00305214966057991	37.7241379310345	0.94466748866138	0.000314679510454243	0.000667517246977875
A_MP	869	G	taaaaGgaggc	FALSE	2	20094	9.95321986662685e-05	38	0	0.000297597233823232	0.000629106040162337

Reference_Name - Name of gene segment or genome assembled
Upstream_Position - Position before insertion variant
Insert - Bases inserted after the upstream position
Context - 5 bp flanking regions around insertion variant
Called - Called insertion variant in terms of VCF
Count - Count of insertion variants
Total - Total depth of insertion variants (must have flanking states in read)
Frequency - Frequency of insertion variant
Average_Quality - Average quality score of insertion variant
ConfidenceNotMacErr - Confidence not machine/sequence error, see formula
PairedUB - Assembly-specific interval upperbound for significance testing based on paired-end end error estimates (uses error rate of 0 for single-end).
QualityUB - Variant-specific interval upperbound for significance testing based on quality error estimates

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